Changelog

Name	PR	Developer	Date	Version
♻️ Refactored linked queries	204	sunnyosun	2022-09-15
⬆️ Update lnbfx to 0.3.5	199	bpenteado	2022-09-14	0.3.9
🔊 Refactor pipeline logging	197	bpenteado	2022-09-14	0.3.8
✨ Insert unmapped features	198	sunnyosun	2022-09-14
♻️ Refactored linked queries	196	sunnyosun	2022-09-13
⬆️ Updated wetlab schema	195	sunnyosun	2022-09-13
:recycle: Refactor pipeline logging	193	bpenteado	2022-09-13	0.3.7
⬆️ Updated lnbfx version	194	sunnyosun	2022-09-12	0.3.6
🍱 Updated cell ranger test dir	192	sunnyosun	2022-09-12
:bug: Fix synchronization error in load	191	Koncopd	2022-09-12
⬆️ Updated setup version	189	sunnyosun	2022-09-08	0.3.5
:recycle: Split ingestion logic into IngestObject and IngestPipeline	188	bpenteado	2022-09-06
📝 Add flow data ingestion example	186	sunnyosun	2022-09-06
💄 Added sidebar to guide	185	sunnyosun	2022-09-06
♻️ Segregate pipeline ingestion (runs, pipelines, and pipeline-linked dobjects) from non-pipeline ingestion (dobjects)	183	bpenteado	2022-09-06
⬆️ Updated schema module versions	184	sunnyosun	2022-09-06
♻️ Refactored query	182	sunnyosun	2022-09-05
🚚 Rename return_df to as_df in query	181	sunnyosun	2022-09-05
:truck: Rename guides to faq and tutorials to guide	180	falexwolf	2022-09-05
♻️ Refactored guide	179	sunnyosun	2022-09-03
📝 Prettify documentation	178	falexwolf	2022-09-02
Update lndb_hub version	176	fredericenard	2022-09-01
✨ Allow querying dobjects by biological entities	175	sunnyosun	2022-09-01	0.3.4
⬆️ Update to sqm 0.0.8 to silence the warnings	174	sunnyosun	2022-08-30
🤡 R&D team simulation	172	sunnyosun	2022-08-30
🚸 Fix pipeline ingestion logging	158	bpenteado	2022-08-30
🚚 Move problems page to lamin-profile	171	falexwolf	2022-08-30
🩹 Uncomment out sharing tests	168	fredericenard	2022-08-30
🔥 Removed examples dir	170	sunnyosun	2022-08-30
🚸 Improve delete function	169	falexwolf	2022-08-30
🎨 Remove track submodule, move session, rename biogram to erdiagram	167	falexwolf	2022-08-29
🚚 Rename .do to .db	166	falexwolf	2022-08-29
🎨 Move header call to nb, re-export all of nbproject	165	falexwolf	2022-08-29
👷 Get rid of sqm warnings	164	falexwolf	2022-08-29
🎨 Simplify loading data	163	falexwolf	2022-08-29
👷 Allow stripping notebooks again, upgrade nbproject_test	162	falexwolf	2022-08-29	0.3.3
✨ Use cell_marker feature model for flow data	161	sunnyosun	2022-08-28
⬆️ Updated to bionty 0.2.2	160	sunnyosun	2022-08-28
⬆️ Updated to sqm 0.0.7	159	sunnyosun	2022-08-28
⬆️ Updated dependencies	157	sunnyosun	2022-08-28
⬆️ Upgrade to lnschema_core 0.5.1	156	falexwolf	2022-08-26
♻️ Update pipeline ingestion to lnschema_core 0.5.0	154	bpenteado	2022-08-26
🍱 Add scrnaseq cellranger dataset	151	bpenteado	2022-08-26
🐛 Fix population of dtransform	155	falexwolf	2022-08-26
✨ Populate dtransform_in	153	falexwolf	2022-08-26
⬆️ Updated dependencies	152	sunnyosun	2022-08-26	0.3.2
♻️ Refactor lnbfx integration	149	bpenteado	2022-08-26
🚧 Temporary solution to extend modules	150	sunnyosun	2022-08-25	0.3.1
🏗️ Make tables within schema modules configurable	148	falexwolf	2022-08-25	0.3.0
✏️ Fixed typo in check versions	147	sunnyosun	2022-08-24
🏗️ Use id to reference storage	146	fredericenard	2022-08-23
🚚 Renamed FeatureModel to LinkFeatureModel	145	sunnyosun	2022-08-23
⬆️ Upgrade to lnbfx 0.2.0	144	falexwolf	2022-08-23
🚚 Renamed id to key in update and delete APIs	143	sunnyosun	2022-08-23
♻️ Cleaned up and added a mouse dataset	142	sunnyosun	2022-08-23
⬆️ Upgrade lndb-hub to v0.5.0	140	fredericenard	2022-08-23
💄 Added logging to update and delete	141	sunnyosun	2022-08-22
✨ Autogenerate query, update and delete functions	139	sunnyosun	2022-08-22
⬆️ Upgrade core schema to v0.4.0	138	falexwolf	2022-08-22
✨ Track storage root location	137	fredericenard	2022-08-22
🚚 Rename schema modules and bioinformatics module	136	falexwolf	2022-08-19
✨ Integrate bioinformatics pipline runs	133	bpenteado	2022-08-18
📝 Updated docs	135	sunnyosun	2022-08-18
👽 Adapt to lnschema-bionty 0.1.4	134	sunnyosun	2022-08-18
⚡ Ingest genes properly	131	sunnyosun	2022-08-16
✨ New readout table, registered species	130	sunnyosun	2022-08-12
🚚 Migrate bioreader to bioreadout	129	sunnyosun	2022-08-04
⬆️ Upgrade to lndb_setup 0.5.0	128	falexwolf	2022-08-03
⬆️ Upgrade to lnschema_core 0.3.0	127	falexwolf	2022-08-03
🚚 Renamed meta.annotate to db.link	126	sunnyosun	2022-08-03
👷 Cleaner CI environment switching	125	falexwolf	2022-08-02	0.2.1
⬆️ Upgrade to lndb_setup 0.4.2	123	falexwolf	2022-08-02	0.2.0
📝 Polish the introspect tutorial	122	falexwolf	2022-08-02
📝 Polish the 4 key tutorial pages	121	falexwolf	2022-08-02
📝 Polish get-started & query-data	119	falexwolf	2022-08-01
✨ Allow ingesting fcs files and querying genes	118	sunnyosun	2022-08-01
📝 Prettify user mentions in guide & faq	117	falexwolf	2022-08-01
⬆️ Upgrade to lndb_setup 0.4.0	116	falexwolf	2022-08-01
🎨 Overhauled guide, renamed load to query.table_as_df	115	sunnyosun	2022-08-01
🩹 Some fixes of ingesting in-memory dobjects and an analysis draft	114	falexwolf	2022-07-31
✨ Query and update metadata	113	sunnyosun	2022-07-31
📝 Add a problem statement	112	falexwolf	2022-07-31
⬆️ Upgrade to lamindb-schema 0.3.1	111	falexwolf	2022-07-31
🚧 Annotate features during ingestion	110	sunnyosun	2022-07-31
📝 Re-write landing page	109	falexwolf	2022-07-30
📝 Improve get-started and collaborate guide	108	falexwolf	2022-07-30
⬆️ Upgrade to lnschema_core 0.2.0	106	falexwolf	2022-07-29
🚚 Move out lndb_hub	105	falexwolf	2022-07-29
♻️ Refactor sharing on the hub	104	falexwolf	2022-07-29
✨ Enable sharing dobjects & instances in the hub	69	fredericenard	2022-07-29
🔥 Moved readout vocab to bioreader	103	sunnyosun	2022-07-28
⬆️ Upgrade lndb_setup to 0.3.0	102	falexwolf	2022-07-26
⬆️ Upgrade to lndb-cli 0.2.0	101	falexwolf	2022-07-25
🚚 Account for table construction in lndb-cli	99	falexwolf	2022-07-25
🚚 Move CLI code to lndb-cli	98	falexwolf	2022-07-24
🍱 Adapted to lnschema-biology 0.1.1	97	sunnyosun	2022-07-24
🚸 Let the CLI have actual subcommands	96	falexwolf	2022-07-24
👷 Add time out to GitHub Actions	93	Koncopd	2022-07-23
🔥 Switched logger to use lamin-logger	92	sunnyosun	2022-07-23
✨ Annotate biometa when annotating genes	90	sunnyosun	2022-07-23
🔼 Upgrade to schema 0.2.1	89	falexwolf	2022-07-23
🎨 Use modular schema structure	88	falexwolf	2022-07-22
🚚 Move db API from admin to dev	87	falexwolf	2022-07-22
✨ Enable annotating features of dobjects	81	sunnyosun	2022-07-22
🚸 Offer manual way of completing a migration	86	falexwolf	2022-07-22
🏗️ Separate settings into user vs. instance and one file per instance	83	fredericenard	2022-07-22
🐛 Fix loading of multi-index and non-id tables	85	falexwolf	2022-07-21	0.1.2
🚚 Rename table interface to jupynb: migrate to schema v0.1.1	84	falexwolf	2022-07-21
🚚 Move version check into correct init	82	falexwolf	2022-07-20
⬆️ Fix the publishing call by upgrading to nbproject 0.4.3	80	falexwolf	2022-07-19	0.1.1
✨ Add schema_version check	79	falexwolf	2022-07-19	0.1.0
🚚 Rename lamindb.model to laminln.schema	77	falexwolf	2022-07-17
🚚 Migrate schema out to lamindb-schema	76	falexwolf	2022-07-17
✨ Version dobjects and interfaces	75	falexwolf	2022-07-16
💄 Pretty logging	74	sunnyosun	2022-07-15
✨ Implemented ingest.add and ingest.commit for ingesting multiple datasets within a notebook	73	sunnyosun	2022-07-14
📝 Added an example of ingesting images	72	sunnyosun	2022-07-12
⬆️ Upgrade to nbproject 0.2.1	71	falexwolf	2022-07-12
🐛 Fix bug	70	falexwolf	2022-07-12
📝 Added example notebook for ingesting fcs files	66	sunnyosun	2022-07-11
⬆️ Migrate to nbproject 0.2.0	68	falexwolf	2022-07-11
🚸 Auto-check integrity upon data ingestion only on Jupyter Lab	65	falexwolf	2022-07-09	0.0.9
🚚 Renamelndb config to lndb init and rewrite get-started tutorial	64	falexwolf	2022-07-09
🚸 Raise error upon multiple sign ups with same unconfirmed email	63	falexwolf	2022-07-09
✨ Allow sharing instances with other users	62	falexwolf	2022-07-08
🏗️ Improve configuration logic, flow, logging & testing	61	falexwolf	2022-07-08
✨ Populate user metadata at sign up	60	fredericenard	2022-07-07
✨ Unique user identity across instances	59	falexwolf	2022-07-06
🚧 Enable storing sqlite on S3	58	falexwolf	2022-07-04	0.0.8
🚚 Rename table file to dobject	57	falexwolf	2022-07-04
🚚 Rename CLI from lamindb to lndb	56	falexwolf	2022-07-04
✨ Add instance_name to settings and instance to setup	55	falexwolf	2022-07-03	0.0.7
♻️ Refactor file storage	54	falexwolf	2022-07-03	0.0.6
♻️ Refactor settings	52	falexwolf	2022-07-02	0.0.5
👷 Switch to nbproject tests & clean up logging	51	falexwolf	2022-07-01
✨ Use nbproject publish functionality	50	falexwolf	2022-07-01
🚚 Rename tutorial to guide	49	falexwolf	2022-06-29
👷 Measure coverage	48	sunnyosun	2022-06-26
🏗️ Settings: From pydantic BaseModel to custom class	46	falexwolf	2022-06-25
🏗️ Complete refactor of setup, settings & storage management	45	falexwolf	2022-06-25
⬆️ Upgrade to nbproject 0.1a3	43	falexwolf	2022-06-23
📝 One-page layout for data models	42	falexwolf	2022-06-14
♻️ More explicit _id name for such fields	41	falexwolf	2022-06-14
♻️ Migrate from sql to sqm everywhere	40	falexwolf	2022-06-14
✨ Implement data access log track.do	39	falexwolf	2022-06-12	0.0.4
🏗️ Re-organize API	38	falexwolf	2022-06-12
🏗️ Set up db with sqlmodel, test int ids	37	falexwolf	2022-06-11
🏗️ Re-designed entire API	36	falexwolf	2022-06-10
🔥 Remove notion integration up to CLI	35	falexwolf	2022-06-10
📝 Rename from lamindb to LaminDB & rewrite the landing page	34	falexwolf	2022-06-10	0.0.3
🏗️ Introduce field interface.type	31	falexwolf	2022-06-09
🚚 Rename global source table to interface	30	falexwolf	2022-06-09
✨ Track python package dependencies in source.dependency	27	falexwolf	2022-06-09
✨ Track title of ingesting notebook in source.name	26	falexwolf	2022-06-09
🐛 Fix user & notebook ingestion, add another test dataset	24	falexwolf	2022-06-08
✅ Fix pandas load, add tests for converting between sqlcore & pandas, add tests for setup	23	falexwolf
✨ Add introspection tools: db.diagram(), db.entities(), db.load()	22	falexwolf
✨ Add entity user	21	falexwolf
🚸 Auto-create local storage dir & cache dir	20	falexwolf
✅ Add a test for db creation & file ingestion	18	falexwolf
🏗️ Name the database file like the storage root directory	17	falexwolf
♻️ Refactor lndb.db	16	falexwolf
🔧 Refactor lndb.settings	15	falexwolf
🔥 Remove versioneer	14	falexwolf
👷 Track changes as in cookiecutter-py 0.3.0	13	falexwolf	2022-06-07
🏗️ Basic file ingestion from a notebook	9	falexwolf	2022-06-06
🔥 Remove sqlmodel dependency	8	falexwolf	2022-06-04
📄 Change format of license file	7	falexwolf	2022-05-23
📝 Fix faq link	6	falexwolf	2022-05-26
♻️ Update to cookiecutter 0.2.0	5	falexwolf	2022-05-23
💄 More narrow sidebar	4	falexwolf	2022-05-11
💄 Switch faq and api	3	falexwolf	2022-05-11
📝 Polish the documentation	2	falexwolf	2022-05-11
🚚 Migrated from lamin repository	1	falexwolf

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Ingesting flow cytometry data with cell markers